Biological Sciences

Publications

Recent Publications

2012 Faculty Publications

Tracy J. Farnsworth, Alan C. Frantz, and Ronald W. McCune. 2012. Community-based distributive medical education: Advantaging society. Med Educ Online, 2012, 17: 8432- DOI: 10.3402/meo.v17i0.8432. URL http://med-ed-online.net/index.php/meo

Meldrum, Jeff. 2012. Adaptive radiations, bushy evolutionary trees, and relict hominoids. The Relict Hominoid Inquiry 1:51-56. This is the inaugural editorial in the first volume of the on-line, free access, refereed journal, The Relict Hominoid Inquiry, ISSN 2165-770X. http://www.isu.edu/rhi/

Dorcas, M. E. and C. R. Peterson. 2012. Automated data acquisition. Pp. 61-68 In: M. Foster, R. McDiarmid, C. Guyer, J.W. Gibbons, and N. Chernoff. (eds.). Reptile Biodiversity: Standard Methods for Inventory and Monitoring. University of California Press, Los Angeles, CA.

C. R. Peterson and J.R. Lee. 2012. Using Geographical Information Systems to design reptile surveys. Pp. 34-41 In: M. Foster, R. McDiarmid, C. Guyer, J.W. Gibbons, and N. Chernoff. (eds.). Reptile Biodiversity: Standard Methods for Inventory and Monitoring. University of California Press, Los Angeles, CA.

Peter Hallock and Michael A. Thomas. 2012. Integrating the Alzheimer's Disease Proteome and Transcriptome: A Comprehensive Network Model of a Complex Disease. OMICS: A Journal of Integrative Biology, Vol. 16, No. 1-2, January 2012: 37-49.

Weber, C.F. and Kuske, C.R. 2012. Comparative assessment of fungal cellobiohydrolase I richness and composition in cDNA generated using oligo(dT) primers or random hexamers. Journal of Microbiological Methods. doi:10.1016/j.mimet.2011.11.016.

2011 Faculty Publications

Robert A. Martin, Pablo PelŠez-Campomanes, James G. Honey, Federica Marcolini, and William A. Akersten. 2011. Five million years of pocket gopher history in the Meade Basin of southwestern Kansas and northwestern Oklahoma. Journal of Vertebrate Paleontology 31:4, 866-884.

*Bellmore, J. R., C.V. Baxter, A. Ray, L. Denny, E. Galloway, K. Tardy. In press. Assessing the potential for salmon recovery via floodplain restoration: an ecosystem level production budget analysis. Environmental Management.

*Benjamin, J.R. and C.V. Baxter. In press. Is a trout a trout? A range-wide comparison shows nonnative brook trout exhibit greater density, biomass, and production than native inland cutthroat trout. Biological Invasions.

McWethy, D.B., W.F. Cross, C.V. Baxter, C. Whitlock, and R.E. Gresswell. In press. Natural disturbance dynamics - shaping the Yellowstone landscape. Invited chapter In R.A. Garrott and P.J. White, editors. Yellowstone's wildlife in transition. Harvard University Press.

*Benjamin, J.R. K.D. Fausch, and C.V. Baxter. 2011. Species replacement by a nonnative salmonid alters ecosystem function by reducing prey subsidies that support riparian spiders. Oecologia 167(2):503-12.

*Lance, M.J. and C.V. Baxter. 2011. Abundance, production, and tissue composition of mountain whitefish (Prosopium williamsoni) in a central Idaho wilderness stream. Northwest Science 85(3):445-454.

*Marcarelli, A.M. C.V. Baxter, *M.M. Mineau, and R.O. Hall. 2011. Quantity and quality: unifying food web and ecosystem perspectives on the role of resource subsidies in freshwaters. Ecology. In press.

Cross, W.F., C.V. Baxter, *K.C. Donner, E.J. Rosi-Marshall, T.A. Kennedy, R.O. Hall, Jr., H.W. Kelly, and R.S. Rogers. 2011. Ecosystem ecology meets adaptive management: food web response to a controlled flood on the Colorado River, Glen Canyon. Ecological Applications. In press.

*Mineau, M.M., C.V. Baxter, *A.M. Marcarelli. 2011. A non-native riparian tree (Elaeagnus angustifolia) changes nutrient dynamics in streams. Ecosystems. DOI: 10.1007/s10021-011-9415-0.

*Lance, M.J. and C.V. Baxter. 2011. Abundance, production, and tissue composition of mountain whitefish (Prosopium williamsoni) in a central Idaho wilderness stream. Northwest Science. In press.

*Yard, M.D., L.G. Coggins, C.V. Baxter, G.E. Bennett, and J.T. Korman. 2011. Trout piscivory in the Colorado River, Grand Canyon: Effects of turbidity, temperature, and fish prey availability. Transactions of the American Fisheries Society. In press.

Whiting*, J.C., R.T. Bowyer, J.T. Flinders, and D.L. Eggett. 2011. Reintroduced bighorn sheep: fitness consequences of adjusting parturition to local environments. Journal of Mammalogy 92:213-220.

Nelson, D.B., Abbott, M.B., Steinman, B., Polissar, P.J., Stansell, N., Ortiz, J.D., Rosenmeier, M.F., Finney, B. and Riedel, J. 2011. Drought variability in the Pacific Northwest from a 6,000-yr lake sediment record. Proceedings of the National Academy of Sciences 108: 3870-3875.

Chen, G., Saulnier-Talbot, E., Selbie, D.T., Brown, E., Schindler, D.E., Bunting, L., Leavitt, P.R., Finney, B.P. and Gregory-Eaves, I. 2011. Salmon-derived nutrients drive diatom beta-diversity patterns. Freshwater Biology 56: 292-301.

Anderson, L., Finney, B.P. and Shapley, M.D. 2011. Lake Carbonate-¥18O records from the Yukon Territory, Canada: Little Ice Age moisture variability and patterns. Quaternary Science Reviews 30: 887-898.

Howard, D. R., Lee, N., Hall, C. L. and Mason, A.C. 2011. Are Centrally Displaying Males Always the Centre of Female Attention? Acoustic Display Position and Female Choice in a Lek Mating Subterranean Insect. Ethology 117: 199-207.

Jeffrey P. Hill, Matthew J. Germino and Deborah A. Alongi*. 2011. Carbon-use efficiency in green sinks is increased when a blend of apoplastic fructose and glucose is available for uptake. Journal of Experimental Botany. First published online February 24, 2011 doi:10.1093/jxb/erq407.

Hall, Carrie L., Wadsworth, Nicolas K., Howard, Daniel R., Jennings, Eleanor M., Magnuson, Timothy S., and Smith, Rosemary J. 2011. Inhibition of microorganisms on a carrion breeding resource: the antimicrobial peptide activity of burying beetle (Coleoptera: Silphidae) oral and anal secretions. Environmental Entomology, in press.

D. J. Meldrum, Martin G. Lockley, Spencer G. Lucas, and Charles Musiba. 2011. Ichnotaxonomy of Laetoli Trackways: The Earliest Hominin Footprints. Journal of African Earth Sciences 60: 1-12.

Sarmiento, E.E. and Meldrum D.J. Behavioral and phylogenetic implications of a narrow allometry study of Ardipithecus ramidus. Homo -- Journal of Comparative Human Biology. In press, 2011

Pfau, J.C., S. Li, Sara Holland, J.J. Sentissi. Alteration of fibroblast phenotype by asbestos-induced autoantibodies. Journal of Immunotoxicology. In Press, 2011.

Gamperl A. K., Swafford B., Rodnick K. J. 2011. Elevated temperature, per se, does not limit the ability of rainbow trout to increase stroke volume. Journal of Thermal Biology 36:7-14.

Harmon, Kelli J., Bolinger, Mark T., Rodnick, Kenneth J. 2011. Carbohydrate energy reserves and effects of food deprivation in male and female rainbow trout. Comp Biochem Physiol A 158:423-431.

Michael A. Thomas, Luobin Yang, Barbara Carter & Rebecca Klaper. 2011. Gene set enrichment analysis of microarray data from Pimephales promelas (Rafinesque), a non-mammalian model organism. BMC Genomics 12:66.

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2010 Faculty Publications

Aho, K., and T. Weaver. 2010. Ecology of alpine nodes: environments, communities, and ecosystem evolution (Mount Washburn; Yellowstone National Park). Arctic, Antarctic and Alpine Research. 40(2):139- 151.

Aho, K., Long, R. A. Kie, J. G. and R. T. Bowyer. 2010. A new index for measuring perpendicularity of animal movements in relation to patch boundaries. Ecological Modelling. 221(17):2003-2007.

Marcarelli, A.M., R.W. Van Kirk and C.V. Baxter. 2010. Predicting effects of hydrologic alteration and climate change on ecosystem metabolism in a western U.S. river. Ecological Applications [doi:10.1890/09-2364.1]

Wipfli, M.S. and C.V. Baxter. 2010. Prey resources for riverine fishes: modeling spatial and seasonal change across drainage networks. Fisheries 35:373-387.

Fausch, K.D., C.V. Baxter, and M. Murakami. 2010. Multiple stressors in north temperate streams: lessons from linked forest-stream ecosystems in northern Japan. Freshwater Biology 55: 12-134.

Malison, R.L. and C.V. Baxter. 2010. Effects of wildfire of varying severity on benthic stream insect assemblages and emergence. Journal of North American Benthological Society.

Malison, R.L., J. Benjamin, and C.V. Baxter. 2010. Measuring adult insect emergence from streams: the influence of trap placement and a comparison with benthic sampling. Journal of North American Benthological Society 29(2):647-656.

*Malison, R.L. and C.V. Baxter. 2010. The "fire pulse:" wildfire stimulates flux of aquatic prey to terrestrial habitats driving increases in riparian consumers. Canadian Journal of Fisheries and Aquatic Sciences 67(3):570-579.

Benjamin, J.R. and C.V. Baxter. 2010. Do nonnative salmonines exhibit greater density and production than the natives they replace? A comparison of nonnative brook trout to native cutthroat trout. Transactions of the American Fisheries Society 139:641-651.

Rosi-Marshall, E.J., Kennedy, T.A., Kincaid, D.W., Cross, W.F., Kelly, H.A.W., Behn. K.A., White, T., Hall, R.O., Jr., and Baxter, C.V. 2010. Short-term effects of the 2008 high-flow experiment on macroinvertebrates in the Colorado River below Glen Canyon Dam, Arizona: U.S. Geological Survey Open-File Report 2010-1031, 28 p.[http://pubs.usgs.gov/of/2010/1031/].

Cross, W.F., E. Rosi-Marshall, K. Behn, T.A. Kennedy, R.O. Hall, A.E. Fuller, and C.V. Baxter. 2010. Invasion and production of New Zealand mud snails in the Colorado River, Glen Canyon. Biological Invasions.

Bearden S. E., Beard R. S., Pfau J. C. Extracellular transsulfuration generates hydrogen sulfide from homocysteine and protects endothelium from redox stress. American Journal of Physiology: Heart and Circulatory Physiology, 299:H1568-H1576, 2010.

Beard R. S., Bearden S. E. Vascular Complications of Cystathionine-Synthase Deficiency: Future Directions for Homocysteine-to-Hydrogen Sulfide Research. Review. American Journal of Physiology: Heart and Circulatory Physiology, accepted October 20, 2010. IN PRESS.

Stewart, K. M., R. T. Bowyer, J. G. Kie, and M. A. Hurley. 2010. Spatial distributions of mule deer and North American elk: resource partitioning in a sage-steppe environment. The American Midland Naturalist 163:400-412.

J. C. Whiting, R. T. Bowyer, J. T. Flinders, V. C. Bleich and J. G. Kie. 2010. Sexual segregation and use of water by bighorn sheep: implications for conservation. Animal Conservation 13:541-548.

Jayaram Bhandari, Alicia Heather Fitzpatrick, and Dring N. Crowell. 2010. Identification of a novel abscisic acid-regulated farnesol dehydrogenase from Arabidopsis thaliana. Plant Physiology 10.1104/pp.110.157784.

Bruce P. Finney, Jürgen Alheit, Kay-Christian Emeis, David B. Field, Dimitri Gutiérrez, and Ulrich Struck. 2010. Paleoecological Studies on Variability in Marine Fish Populations: A Long-Term Perspective on the Impacts of Climatic Change on Marine Ecosystems. Journal of Marine Systems 79:316-326.

Jason A. Addison, James E. Beget, Thomas A. Ager, and Bruce P. Finney. 2010. Marine tephrochronology of the Mt. Edgecumbe Volcanic Field, Southeast Alaska, USA. Quaternary Research 73:277-292.

Mark B. Abbott, Mary E. Edwards, and Bruce P. Finney. 2010. A 40,000-yr Record of Environmental Change from Burial Lake in Northwest Alaska. Quaternary Research 74:156-165.

G. H. Miller, J. Brigham-Grette, R. B. Alley, L. Anderson, H. A. Bauch, M. S. V. Douglas, M. E. Edwards, S. A. Elias, B. P. Finney, J. J. FItzpatrick, S. V. Funder, T. D. Herbert, L. D. Hinzman, D. S. Kaufman, G. M. MacDonald, L. Polyak, A. Robock, M. C. Serreze, J. P. Smol, R. Spielhagen, J. W. C. White, A. P. Wolfe, and E. W. Wolff. 2010. Temperature and Precipitation History of the Arctic. Quaternary Science Reviews 29:1679-1715.

Diane M. Debinski, Hadley Wickham, Kelly Kindscher, Jennet C. Caruthers, and Matthew Germino. 2010. Mountain Meadows Change During Drought Varies With Background Hydrologic Regime and Plant Functional Group. Ecology 91 (6):1672-1681.

Sheel Bansal and Matthew J. Germino. 2010. Variation in Ecophysiological Properties among Conifers at an Ecotonal Boundary: Comparison of Establishing Seedlings and Established Adults at Timberline. Journal of Vegetation Science 21:133-142.

Sheel Bansal and Matthew J. Germino. 2010. Unique Responses of Respiration, Growth, and Non-structural Carbohydrate Storage in Sink Tissue of Conifer Seedlings to an Elevation Gradient at Timberline. Environmental and Experimental Botany.

Joel B. Sankey, Nancy F. Glenn, Matthew J. Germino, Ann Inez N. Gironella, and Glenn D. Thackley. 2010. Relationships of Aeolian Erosion and Deposition with LiDAR-Deprived Landscape Surface Roughness Following Wildfire. Geomorphology 119:135-145.

Janet S. Prevéy, Matthew J. Germino, Nancy J. Huntly. Loss of foundation species increases population growth of exotic forbs in sagebrush steppe. Ecological Applications. October, Vol. 20, No. 7: 1890-1902.

Yuzhe Du, Wizhong Song, James R. Groome, Yoshiko Nomura, Ningguang Luo and Ke Dong. 2010. A negative charge in transmembrane segment 1 of domain II of the cockroach sodium channel is critical for channel gating and action of pyrethorid insecticides. Toxicology and Applied Pharmacology 247:53-59.

*Takahashi M. and Huntly N. 2010. Herbivorous insects reduce growth and reproduction of big sagebrush (Artemisia tridentata). Arthropod-Plant Interactions 4:257-266 DOI 10.1007/s11829-010-9108-1.

Jenkins, A. R. and Keeley, E. R. 2010. Bioenergetic Assessment of Habitat Quality for Stream-dwelling Cutthroat Trout (Oncorhynchus clarkii bouvieri) with Implications for Climate Change and Nutrient Supplementation. Canadian Journal of Fisheries and Aquatic Sciences 67: 371-385.

John G. Kie, Jason Matthiopoulos, John Fieberg, Roger A. Powell, Francesca Cagnacci, Michael S. Mitchell, Jean-Michel Gaillard, and Paul R. Moorcroft. 2010. The Home-range Concept: Are traditional Estimators Still Relevant with Modern TeleMetry Technology? Philosophical Transactions of the Royal Society 365:2221-2231.

Peter E. Smouse, Stefano Focardi, Paul R. Moorcroft, John G. Kie, James D. Forester, and Juan M. Morales. Stochastic Modelling of Animal Movement. Philosophical Transactions of the Royal Society 365:2201-2211.

Juan M. Morales, Paul R. Moorcroft, Jason Matthiopoulos, Jacqueline L. Frair, John G. Kie, Roger A. Powell, Eveleyn H. Merrill, and Daniel T. Hayden. Building the Bridge Between Animal Movement and Population Dynamics. Philosophical Transactions of the Royal Society 365:2289-2301.

Stanley M. Tomkiewicz, Mark R. Fuller, John G. Kie, and Kirk K. Bates. Global Positioning System and Associated Technologies in Animal Behaviour and Ecological Research. Philosophical Transactions of the Royal Society 365:2263-2176.

Hopkins, Jessica M., Amy M. Marcarelli, and Heather A. Bechtold. 2010. Ecosystem Structure and Function are Complementary Measures of Water Quality in a Polluted, Spring-Influenced River. Water Air Soil Pollut [DOI 10.1007/s11270-010-0432-y].

McAleese, Daniel R.and Delane C. Kritsky. 2010. New Host and Locality Records for Gyrodactylus wardi Kritsky and Mizelle, 1968 (Monogenoidea: Gyrodactylidae), from Suckers, Catostomus spp. (Catostomidae), in Idaho. Comparative Parasitology 77(2):218-220.

Bunderson-Schelvan, M., J. Pfau, R. Crouch, A. Holian. 2010. Non-Pulmonary Outcomes of Asbestos Exposure. Journal of Toxicology and Environmental Health, In Press.

Ray, A. E., S. A. Connon, P. P. Sheridan, J. Gilbreath, M. S. Shields, D. T. Newby, Y. Fujita, and T. S. Magnuson. 2010. Intragenomic heterogeneity of the 16S rRNA gene in strain UFO1 caused by a 100 bp insertion in helix 6. FEMS Microbiol. Ecol. In Press.

Amanda Hill, Daryl Norris, Tamara Salazar, and Gene Scalarone. 2010. Comparative Studies on Antibody Detection using Yeast Phase Lysate Antigens Prepared from Virulent and Avirulent Isolates of Blastomyces dermatitidis. Journal of the Idaho Academy of Science Volume 46: 76-80.

Madeline Fasen, Wesley Harris, Kevan Mikesell, and Gene M. Scalarone. 2010. Antibody Detection using Blastomyces dermatitidis Antigenic Reagents prepared from Unusual Isolates of the Fungus. Journal of the Idaho Academy of Science Volume 46: 81-86.

Kelsey Metzger & Michael A. Thomas. 2010. Detection of positive Darwinian selection in the human chemokine gene family. BMC Evolutionary Biology 10:139.

Byron V. Weckworth, Sandra L. Talbot, and Joseph A. Cook. 2010. Phylogeography of wolves (Canis lupus) in the Pacific Northwest. Journal of Mammalogy 91(2):363-375.

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2009 Faculty Publications

Rakesh Mandal and Curtis W. Anderson. Anatomical Organization of Brainstem Circuits Mediating Feeding Motor Programs in the Marine Toad, Bufo marinus. Brain Research Volume 1298, 28 October 2009, Pages 99-110.

Bailey J. K., J. A. Schweitzer, F. Úbeda, J. Koricheva, M. D. Madritch, C. J. LeRoy, B. J. Rehill, R. K. Bangert, D. G. Fisher, G. J. Allan, and T. G. Whitham. 2009. From Genes to Ecosystems: A Synthesis of the Effects of Plant Genetic Factors Across Levels of Organization. Philosophical Transactions of the Royal Society B 364:1607-1616.

Bangert R. K., E. V. Lonsdorf, G. M. Wimp, S. M. Shuster, D. Fischer, J. A. Schweitzer, G. J. Allan, J. K. Bailey, and T. G. Whitham. 2008. Genetic structure of a foundation species: scaling community phenotypes from the individual to the region. Heredity 100:121-131.

Whiting, J. C., R. T. Bowyer, and J. T. Flinders. 2009. Diel use of water by reintroduced bighorn sheep. Western North American Naturalist 69:407-412.

Jennifer I. Schmidt, Kris J. Hundertmark, R. Terry Bowyer, and Kevin G. McCracken. 2009. Population Structure and Genetic Diversity of Moose in Alaska. 2009. Journal of Heredity 100(2):170-180.

Lawrence K. Duffy, Michael W. Oehler, Sr., R. Terry Bowyer and Vernon C. Bleich. 2009. Mountain Sheep: An Environmental Epidemiological Survey of Variation in Metal Exposure and Physiological Biomarkers Following Mine Development. American Journal of Environmental Sciences 5 (3): 296-303.

Jericho C. Whiting, R. Terry Bowyer and Jerran T. Flinders. 2009. Annual Use of Water Sources by Reintroduced Rocky Mountain Bighorn Sheep Ovis canadensis canadensis: Effects of Season and Drought. Acta Theriologica 54 (2): 127-136.

Kevin L. Monteith, Lowell E. Schmitz, Jonathan A. Jenks, Joshua A. Delger, and R. Terry Bowyer. 2009. Growth of Male White-Tailed Deer: Consequences of Maternal Effects. Journal of Mammalogy. 90(3):651-660.

Kelley M. Stewart, R. Terry Bowyer, John G. Kie, Brian L. Dick, Roger W. Ruess. 2009. Population Density of North American Elk: Effects on Plant Diversity. Oecologia 161:303-312.

Ryan A. Long, John G. Kie, R. Terry Bowyer, and Mark A. Hurley. 2009. Resource Selection and Movements by Female Mule Deer Odocoileus hemionus: Effects of Reproductive Stage. Wildland Biology 15:288-298.

Jericho C. Whiting, Kelley M. Stewart, R. Terry Bowyer, and Jerran T. Flinders. 2009. Reintroduction Bighorn Sheep: Do Females Adjust Maternal Car to Compensate for Late-born Young? European Journal of Wildlife Research DOI 10.1007/s10344-009-0323-y.

Rasweiler IV, J. J., Cretekos, C. J., and Behringer, R. R. 2009. The short-tailed fruit bat Carollia perspicillata: A model for studies in reproduction and development. In Emerging model organisms, vol. 1, pp. 519-555. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

Nolte M., Hockman D., Cretekos C. J., Behringer R. R., and Rasweiler J. J.IV. 2009. Embryonic staging system for the black mastiff bat, Molossus rufus (Molossidae), correlated with structure-function relationships in the adult. Anatomical Record 292(2):155-68.

Nicole Misarti, Bruce Finney, Herbert Maschner, and Matthew J. Wooller. 2009. Changes in Northeast Pacific Marine Ecosystems over the Last 4500 Years: Evidence from Stable Isotope Analysis of Bone Collagen from Archeological Middens. The Holocene19. 8:1139-1151.

A. J. Gharrett and B. P. Finney. 2009. What Does Genetics Have to Do with It? Alaska Sea Grant College Program 2008, doi:10.4027/wdghdi.2008.03

Eva M. Krümmel, Michael Scheer, Irene Gregory-Eaves, Robie W. Macdonald, Lynda E. Kimpe, John P. Smol, Bruce Finney, and Jules M. Blais. 2009. Historical Analysis of Salmon-Derived Polychlorinated Biphenyls (PCBs) in Lake Sediments. Science of the Total Environment 407:1977-1989.

Bird, B. W., Abbott, M. B., Finney, B. P., and Kutchko, B. A. 2009. 2000 year varve-based climate record from the central Brooks Range, Alaska. Journal of Paleolimnology 41:25-41.

Mills, K., Mackay, A. W., Bradley, R. S., and Finney, B.2009. Diatom and stable isotope records of late-Holocene lake ontogeny at Indrepollen, Lofoten, NW Norway: A response to glacio-isostasy and Neoglacial cooling. The Holocene 19: 261-271.

S. E. Walinsky, F. G. Prahl, A. C. Mix, B. P. Finney, J. M. Jaeger, G. P. Rosen. 2009. Distribution and composition of organic matter in surface sediments of coastal Southeast Alaska. Continental Shelf Research 29 (2009) 1565-1579.

Daniel T. Selbie, Bruce P. Finney, David Barto, Lynda Bunting, Guangjie Chen, Peter R. Leavitt, Erland A. MacIsaac, Daniel E. Schindler, Mark D. Shapley, and Irene Gregory-Eavesa. 2009. Ecological, landscape, and climatic regulation of sediment geochemistry in North American sockeye salmon nursery lakes: Insights for paleoecological salmon investigations. Limnology and Oceanography 54(5) 1733-1745.

E. S. Kane, W. C. Hockaday, M. R. Turetsky, C. A. Masiello, D. W. Valentine, B. P. Finney, and J. A. Baldock. 2009. Topographic Controls on Black Carbon Accumulation in Alaskan Black Spruce Forest Soils: Implications for Organic Matter Dynamics. Biogeochemistry DOI 10.1007/s10533-009-9403-z.

Deanne Drake, Robert J. Naiman, Bruce Finney, and Irene Gregory-Eaves. 2009. Long-term Perspectives on Salmon Abundance: Evidence from Lake Sediments and Tree Rings. American Fisheries Society Symposium 71:65-75.

Herbert D. G. Maschner, Matthew W. Betts, Joseph Cornell, Jennifer A. Dunne, Bruce Finney, Nancy Huntly, James W. Jordan, Aaron A. King, Nicole Misarti, Katherine L. Reedy-Maschner, Roland Russell, Amber Tews, Spencer A. Wood, and Buck Benson. 2009. An Introduction to the Biocomplexity of Sanak Island, Western Gulf of Alaska. Pacific Science, Vol. 63, No. 4:673-709.

Natalie M. Monacci, Ursula Meier-GrŁnhagen, Bruce P. Finney, Hermann Behling, Matthew J. Wooller. 2009. Mangrove ecosystem changes during the Holocene at Spanish Lookout Cay, Belize. Palaeogeography, Palaeoclimatology, Palaeoecology 280:37-46.

John A. Barron, David Bukry, Walter E. Dean, Jason A. Addison, Bruce Finney. 20009. Paleoceanography of the Gulf of Alaska during the Past 15,000 Years: Results from Diatoms, Silicoflagellates, and Geochemistry. Marine Micropaleontology 72:176-195.

Irene Gregory-Eaves, Daniel T. Selbiel, Jon N. Sweetman, Bruce P. Finney, and John P. Smol. 2009. Tracking Sockeye Salmon Population Dynamics from Lake Sediment Cores: A Review and Synthesis. American Fisheries Society Symposium 69:379-393.

Danielle P. Pitel, Kelly A. Lane, Anna K. Hermann, Sarah A. Spaulding, Bruce P. Finney. 2009. Historical Abundance and Morphology of Didymosphenia Species in Naknek Lake, Alaska. Acta botanica Croatica 68 (2), 183-197.

Sankey J., Germino M. J., Glenn N. F. 2009. Aeolian Sediment Transport Following Wildfire in Sagebrush Steppe. Journal of Arid Environments. 73: 912-919.

Joel B. Sankey, Matthew J. Germino, Nancy F. Glenn. 2009. Relationships of Post-fire Aeolian Transport to Soil and Atmospheric Conditions. Aeolian Research 1:75-85.

Smith W. K., Germino M. J., Johnson D. M., Reinhardt K. 2009. The Altitude of Alpine Treeline: A Bellwether of Climate Change Effects. The Botanical Review. 75(2):163-190.

Bansal, S. and Germino, M. J. 2009. Temporal Variation of Nonstructural Carbohydrates in Montane Conifers: Similarities and Differences Among Developmental Stages, Species, and Environmental Conditions. Tree Physiology 20:559-568.

Bansal, S., and Germino, M. J. 2009. Variation in Ecophysiological Properties among Conifers at an Ecotonal Boundary: Comparison of Establishing Seedlings and Established Adults at Timberline. Journal of Vegetation Science (in press). doi: .1111/j.1654-1103.2009.01127.

Deborah A. Alongi, Jeffrey P. Hill and Matthew J. Germino. 2009. Opportunistic Heterotrophy in Gametophytes of the Homosporous Fern Ceratopteris richardii. Botany 87:799-806.

J. Norton, N. Glenn, M. Germino, K. Weber, and S. Seefeldt. 2009. Relative Suitability of Indices Derived from Landsat ETM+ and SPOT 5 for Detecting Fire Severity in Sagebrush Steppe. International Journal of Applied Earth Observation and Geoinformation 11:360-367.

Janet S. Prevey, Matthew J. Germino, Nancy J. Huntly, and Richard S. Inouye. 2009. Exotic Plants Increase and Native Plants Decrease with Loss of Foundation Species in Sagebrush Steppe. Plant Ecology DOI 10.1007/s11258-009-9652-x.

Janet S. Prevey, Matthew J. Germino, and Nancy J. Huntly. 2009. Loss of Foundation Species Increases Population Growth of Exotic Forbs in Sagebrush Steppe. Ecological Applications.

Lamansky, J. A.; Keeley, E. R.; Young, M. K.; and Meyer, K. A. The Use of Hoop Nets Seeded With Mature Brook Trout to Capture Conspecifics. North American Journal of Fisheries Management, *29:*10-17.

Seiler, S. M., Gunnell, K., Ptacek, M. B. and Keeley, E. R. 2009. Morphological patterns of hybridization between Yellowstone cutthroat trout and introduced rainbow trout in the South Fork of the Snake River watershed, Idaho and Wyoming. North American Journal of Fisheries Management 29:1529-1539.

Ryan A. Long, Janathan D. Muir, Janet L. Rachlow, and John G. Kie. 2009. A Comparison of Two Modeling Approaches for Evaluating Wildlife-Habitat Relationships. The Journal of Wildlife Management 73(2):204-302.

Ryan A. Long, Janet L. Rachlow, and John G. Kie. 2009. Sex-Specific Responses of North American Elk to Habitat Manipulation. Journal of Mammalogy 90(2):423-432.

Ma, Y.; Bryant, A.E.; Salmi, D.B.; McIndoo, E.; Stevens, D.L. 2009. vfr: A Novel Locus Affecting Cysteine Protease Production in Streptococcus pyogenes. Journal of Bacteriology March 6. [Epub ahead of print]

Aldape, M. J., Bryant, A. E., Katahira, E. J., Hajjar, A. M., Finegold, S. M.,Ma, Y., Stevens, D. L. 2009. Innate Immune Recognition of and Response to Clostridium sordellii. Anaerobe June 25. [Epub ahead of print]

Stefan P. Kastl, Walter S. Speidl, Katharina M. Katsaros, Christoph Kaun, Gersina Rega, Afhsin Assadian, Georg W. Hagmueller, Martina Hoeth, Rainer De Martin, Yongsheng Ma, Gerald Maurer, Kurt Huber, J. Wojta. 2009 Thrombin Induces the Expression of Oncostatin M via AP-1 Activation in Human Macrophages: a Link Between Coagulation and Inflammation. Blood August 3. [Epub ahead of print]

Marcarelli, A.M., H.A. Bechtold, A.T. Rugenski, and R.S. Inouye. 2009. Nutrient limitation of biofilm biomass and metabolism in the Upper Snake River basin, Southeast Idaho, USA. Hydrobiologia 620:63-76.

Marcarelli, A. M. and W. A. Wurtsbaugh. 2009. Nitrogen Fixation Varies Spatially and Seasonally in Linked Stream-Lake Ecosystems. Biogeochemistry 94: 95-110.

Seiler, S.M. and Keeley, E.R. 2009. Competition between native and introduced salmonid fishes: cutthroat trout have lower growth rate in the presence of cutthroat-rainbow trout hybrids. Canadian Journal of Fisheries and Aquatic Sciences 66: 133-141.

Seiler, M.B. and Keeley, E.R. 2009. Intraspecific taxonomy and ecology characterize morphological divergence among cutthroat trout (Oncorhynchus clarkiissp. Richardson) populations. Biological Journal of the Linnean Society 96: 266-291.

Long, Ryan A., Muir, Jonathan D., Rachlow, Janet L., and Kie, John G. 2009. A Comparison of Two Modeling Approaches for Evaluating Wildlife-Habitat Relationships. The Journal of Wildlife Management 73(2): 294-302.

Meldrum, J. and A. Urfer. 2009. Mosby's Dissector for the Rehabilitation Professional: Exploring Human Anatomy. St. Louis: Mosby/Elsevier.

Ogden, T. H., J. Osborne, L. Jacobus, and M. F. Whiting. 2009. Combined morphological and molecular phylogeny of Ephemerellidae (Ephemeroptera). Zootaxa 1991:28-42.

Sihem Boudina, PhD; Heiko Bugger, MD, PhD; Sandra Sena, PhD; Brian T. O'Neill, MD, PhD; Vlad G. Zaha, MD, PhD; Olesya Ilkun, MS; Jordan J. Wright, BS; Pradip K. Mazumder, DVM, PhD; Eric Palfreyman, MD; Timothy J. Tidwell; Heather Theobald, BS; Oleh Khalimonchuk, PhD; Benjamin Wayment, BS; Xiaoming Sheng, PhD; Kenneth J. Rodnick, PhD; Ryan Centini, BS; Dong Chen, PhD; Sheldon E. Litwin, MD; Bart E. Weimer, PhD; E. Dale Abel, MBBS, DPhil. 2009. Contribution of Impaired Myocardial Insulin Signaling to Mitochondrial Dysfunction and Oxidative Stress in the Heart. Circulation 119:1272-1283.

Trent D. Stephens. 2009. The Effect of Thalidomide in Chicken Embryos. Birth Defects Research (Part A): Clinical and Molecular Teratology 85:725-731.

Takahashi, M., S. M. Louda, T.E.X. Miller, and O'Brien, C.W. 2009. Occurrence of the biological control weevil, Trichosirocalushorridus (Panzer), on a newly acquired native host plant and on a pre-adapted, targeted exotic thistle. Environmental Entomology 38(3): 731-740.

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2008 Faculty Publications

Ken Aho, David W. Roberts, and T. Weaver. 2008. Using Geometric and Non-Geometric Internal Evaluators to Compare Eight Vegetation Classification Methods. Journal of Vegetation Science 19:549-562.

Aho, K., and T. Weaver. 2008. Measuring soil water potential with gypsum blocks: calibration sensitivity. Intermountain Journal of Sciences. 14(1-3).

T. Weaver, Aho, K., and S. Regele. 2008. The choice and siting of natural vegetation in reclamation of disturbed land. pg 764 in Multifunctional grasslands in a changing world, proceedings of the XXI International Grassland Congress, Hohot China, July 2008 Guangdong People's Publishing House.

Robin C. Loft-Wilson, Blair S. Ashley, Janelle E. Billig, Madeline R. Wolfert, Lindsay A. Ambrecht, and Shawn E. Bearden. 2008. Chronic Diet-Induced Hyperhomocysteinemia Impairs eNOS Regulation in Mouse Mesenteric Arteries. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology 295:R59-R66.

Katharine N. Suding, Isabel W. Ashton, Heather Bechtold, William D. Bowman, Megan L. Mobley, and Ryan Winkleman. 2008. Plant and Microbe Contribution to Community Resilience in a Directionally Changing Environment. Ecological Monographs 78(3):313-329.

David M. Leslie, Jr., R. Terry Bowyer, and Jonathan A. Jenks. 2008. Facts From Feces: Nitrogen Still Measures Up as a Nutritional Index for Mammalian Herbivores. The Journal of Wildlife Management 72(6):1420-1433.

Jericho C. Whiting, R. Terry Bowyer, and Jerran T. Flinders. 2008. Young Bighorn (Ovis canadensis) Males: can they Successfully Woo Females? Ethology 114:32-41.

Villepique, J.T., V.C. Bleich, R.A. Botta, B.M. Pierce, T.R. Stephenson, and R.T. Bowyer. 2008. Evaluating GPS collar error: a critical evaluation of Televilt POSREC-Science™ collars and a method for screening location data. California Fish and Game 94:155-168.

Cretekos C.J., Wang Y, Green E.D., NISC Comparative Sequencing Program, Martin J.F., Rasweiler J.J.IV, and Behringer R.R. 2008. Regulatory divergence modifies limb length between mammals. Genes & Development 15; 22(2):141-51.

Hockman D., Cretekos C.J., Mason M.K., Behringer R.R., Jacobs D.S. and Illing N. 2008. A second wave of Sonic hedgehog expression during the development of the bat limb. Proceedings of the National Academy of Science, USA 105(44):16982-7.

Huizinga, D. H., Omosegbon, O., Omery, B., and Crowell, D. N. 2008. Isoprenylcysteine methylation and demethylation regulate abscisic acid signaling in Arabidopsis. Plant Cell 20: 2714-2728.

Crowell, D. N., and Huizinga, D. H. 2008. Protein isoprenylation: the fat of the matter. Trends Plant Sci., in press.

Gerber, E., Hemmerlin, A., Hartmann, M., Heintz, D., Hartmann, M.-A., Mutterer, J., Rodriguez-Concepcion, M., Boronat, A., van Dorsselaer, A., Rohmer, M., Crowell, D. N., and Bach, T. J. 2008. The plastidial 2C-Methyl-D-Erythritol 4-Phosphate Pathway Provides the Isoprenyl Moiety for Protein Geranylgeranylation in Tobacco BY-2 Cells. Plant Cell, in press.

DeVeaux, L.C. 2008. Radiation-Induced Bystander Effects, p. 323-344. In W.-Y. Tan and L. Hanin (ed.), Handbook of Cancer Models with Applications, vol. 9. World Scientific Publishing Co., Singapore.

Scott E. LaPatra, Caryn Evilia, and Vern Winston. 2008. Positively Selected Sited on the Surface Glycoprotein (G) of Infectious Hematopoietic Necrosis Virus. Journal of General Virology 89:703-708.

Gharret, A.J. and Finney, B.P. 2008. History of a salmon population. In: What Does Genetics Have to Do with It? Alaska Sea Grant College Program, Fairbanks, AK, p. 23-33, doi:10.4027/wdghdi.2008.03.

Tadayasu Uchiyama, Bruce P. Finney, and Milo D. Adkison. 2008. Effects of Marine-Derived Nutrients on Population Dynamics of Sockeye Salmon (Oncorhynchus nerka). Canadian Journal of Fisheries and Aquatic Sciences 65:1-14.

Daniel Mann, James Edwards, Julie Chase, Warren Beck, Richard Reanier, Michele Mass, Bruce Finney, and John Loret. 2008. Drought, Vegetation Change, and Human History on Rapa Nui (Isla de Pascua, Easter Island). Science Direct Quaternary Research 69:16-28.

Kailey A. Stewart, Scott F. Lamoureux, and Bruce P. Finney. 2008. Multiple Ecological and Hydrological Changes Recorded in Varved Sediments from Sanagak Lake, Nunavut, Journal of Paleolimnology 40:217-233.

Kevin M. O'Neil, Jessica E. Fultz, and Michael A. Ivie. 2008. Distribution of Adult Cerambycidae and Buprestidae (Coleoptera) in a Subalpine Forest under Shelterwood Management. The Coleopterists Bulletin 62(1):27-36.

T. Sankey, M. J. Germino. 2008. Assessment of Juniper Encroachment with the use of Satellite Imagery and Geospatial Data. Rangeland Ecology & Management. 61: 412-419.

S. Bansal, M. J. Germino. 2008. Carbon Balance of Conifer Seedlings at Timberline: Relative Changes in Uptake, Storage, and Utiliztion. Oecologia: DOI 10.1007/s00442-008-1145-4.

James R. Groome, Matthew F. Larsen, and Allyson Coonts. 2008. Differential Effects of Paramyotonia Congenita Mutations F1473S and F17051 on Sodium Channel Gating. Channels 2 (1):39-49.

Gunnell, K., Tada, M.K., Hawthorne, F.A., Keeley, E.R., and Ptacek, M.B. 2008. Geographic patterns of introgressive hybridization between native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and introduced rainbow trout (O. mykiss) in the South Fork of the Snake River watershed, Idaho. Conservation Genetics 9: 49-64.

Ryan A. Long, Janet L. Rachlow, John G. Kie, and Martin Vavra. 2008. Fuels Reduction in a Western Coniferous Forest: Effects on Quantity and Quality of Forage for Elk. Rangeland Ecology & Management 61(3):302-313.

Ryan A. Long, Janet L. Rachlow, and John G. Kie. 2008. Effects of Season and Scale on Response of Elk and Mule Deer to Habitat Manipulation. Journal of Wildlife Management 72(5):1133-1142.

Amanda T. Rugenski, Amy M. Marcarelli, Heather A. Bechtold, and Richard S. Inouye. 2008. Effects of Temperature and Concentration on Nutrient Release Rates from Nutrient Diffusing Substrates. Journal of the North American Benthological Society 27(1):52-57.

S. P. Kastl, W. S. Speidl, C. Kaun, K. M. Katsaros, G. Rega, P. Valent, G. W. Hagmuller, M. Hoeth, R. Martin, Y. Ma, G. Maurer, K. Huber, H. Wojta. 2008. In Human Macrophages the Complement Component C5A Induces the Expression of Oncostatin M via AP-1 Activation. Arteriosclerosis, Thrombosis and Vascular Biology. 28(3):498-503.

Meldrum, D. J. and T.D. Stephens. 2008. Who Are the Children of Lehi? In: D.C. Peterson (ed.) The Book of Mormon and DNA Research. Provo, Utah, Brigham Young University: The Neal A Maxwell Institute for Religious Scholarship, pp. 157-183.

Ogden, T. H., M. Sartori, M. F. Whiting. 2008. Pisciforma, Setisura, and Furcatergalia (Order: Ephemeroptera) are not monophyletic based on 18S rDNA sequences: A Reply to Sun et al. Annals of the Entomological Society of America. 101(1):1-6.

Seth M. Bybee, T. Health Ogden, Marc A. Branham, and Michael F. Whiting. 2008. Molecules, Morphology, and Fossils: A Comprehensive Approach to Odonate Phylogeny and the Evolution of the Odonate Wing. Cladistics 23:1-38.

Jill E. Petrisko, Christopher A. Pearl, David S. Pilliod, Peter P. Sheridan, Charles F. Williams, Charles R. Peterson, and R. Bruce Bury. 2008. Saprolegniaceae Identified on Amphibian Eggs Throughout the Pacific Northwest, USA, by Internal Transcribed Spacer Sequences and Phylogenetic Analysis. Mycologia, 100(2):171-180.

Robison B. D., Drew R. E., Murdoch G. K., Powell M., Rodnick K. J., Settles M., Stone D., Churchill E., Hill R. A., Papasani M. R., Lewis S. S., Hardy R. W. 2008. Sexual Dimorphism in Hepatic Gene Expression and the Response to Dietary Carbohydrate Manipulation in the Zebrafish (Danio rerio). Comp Biochem Physiol (Part D Genomics and Proteomics) 3: 141-154.

Paul A. Cotter, Adrienne J. Han, James J. Everson, and Kenneth J. Rodnick. 2008. Cardiac Hemodynamics of the Rainbow Trout (Oncorhynchus mykiss) Using Simultaneous Doppler Echocardiography and Electrocardiography. Journal of Experimental Zoology 309A:243-254.

Rodnick KJ, St.-Hilaire S, Battiprolu PK, Seiler SM, Kent ML, Powell MS, Ebersole JL. 2008. Habitat selection influences sex distribution, morphology, tissue biochemistry, and parasite load of juvenile coho salmon in the West Fork Smith River, Oregon. Transactions of the American Fisheries Society 137(6):1571-1590.

Drew RE, Rodnick KJ, Settles ML, Wacyk J, Churchill EJ, Powell MS, Hardy RW, Murdoch GK, Hill RA, Robison BD. 2008. Effect of starvation on the transcriptomes of the brain and liver in adult female zebrafish (Danio rerio). Physiological Genomics 35:283-295.

Rasmussen, Devon & Gene M. Scalarone. 2008. Induction and detection of antibodies in immunized rabbits with Blastomyces dermatitidisyeast phase lysate antigens. Proceedings of the 50th Annual Meeting of the Idaho Academy of Science 43 (2):CD.

Bell, Joshua, Joshua Ellis & Gene M. Scalarone. 2008. Determination of optimal parameters for the preparation of Blastomyces dermatitidisyeast phase lysate antigens. Proceedings of the 50th Annual Meeting of the Idaho Academy of Science 43 (2):CD.

Hofstetter, Annamarie, Devon Rasmussen & Gene M. Scalarone. 2008. Blastomyces dermatitidis: A comparative evaluation of two yeast lysate antigens as immunizing agents. Proceedings of the 50th Annual Meeting of the Idaho Academy of Science 43 (2):CD.

Ryan Patterson, Jack Shurley & Gene M. Scalarone. 2008. Isoelectric focusing comparative studies on yeast phase lysate antigens produced from two animal isolates of Blastomyces dermatitidis. Proceedings of the 50th Annual Meeting of the Idaho Academy of Science 43 (2):CD.

Grossman, Judah and Rosemary J. Smith. 2008. Phoretic mite discrimination among male burying beetle (Nicrophorus investigator) hosts. Annals of the Entomological Society of America, 10 (1): 266-271.

Briggs, Brandon, Mitton, T., Magnuson, T. and Smith, Rosemary J. 2008. Teaching cellular respiration and alternative energy sources through a GK-12 partnership. American Biology Teacher, on-line.

Peeler, E.J., Feist, S.W., Longshaw, M.L, Thrush, M.A. and St-Hilaire, S. 2008. An assessment of the variation in the prevalence of renal myxosporidiosis and hepatitis in wild brown trout (Salmo trutta) within and between rivers in south-west England. Journal of Fish Diseases. 31: 719-728.

Rodnick K.J., Battiprolu P.K., Seiler S.M., St-Hilaire S., Kent M., Powell M.S., Ebersole J.L. 2008. Evidence of Differences in sex ratio, swimming performance, morphometrics, and prevalence of disease in coho salmon from West Fork Smith River, Oregon. Transactions of the American Fisheries 137(6):1571-1590.

Lloyd S.J., LaPatra S.E., Snekvik K.R., St-Hilaire S., Cain K.D., Call D.R.. 2008. Strawberry Disease lesions in rainbow trout (Oncorhynchus mykiss) from southern Idaho are associated with DNA from a Rickettsia-like organism. Diseases of Aquatic Organisms 82: 111-118.

Ostland. V.E., V. Watral, C. M. Whipps, F. W. Austin, S. St-Hilaire, M. E. Westerman, and M. L. Kent. 2008. Biochemical, Molecular, and Virulence Characteristics of Select Mycobacterium marinum Isolates In Hybrid Striped Bass (Morone chrysops x Morone saxatilis) and Zebrafish (Danio rerio). Diseases of Aquatic Organisms 79: 107-118.

Baker, R.H.A., R. Black, G. H. Copp, K.A. Haysom, P.E. Hulme, M.B. Thomas, A. Brown, M. Brown, R.J.C. Cannon, J. Ellis, M. Ellis, R. Ferris, R. Garthwaite, P. Glaves, R.E. Gozlan, J. Holt, L. Howe, J.D. Knight, A. MacLeod, N.P. Moore, J.D. Mumford, S.T. Murphy, D. Parrott, C.E. Sansford, G.C. Smith, S. St-Hilaire, N. L. Ward. 2008. Developing a risk assessment scheme for all UK non-native species. Neobiota 7: 46-57.

David T. Thomas, Adjoa R. Ahedor, Charles F. Williams, Claude dePamphilis, Daniel J. Crawford, and Qiu-Yun (Jenny) Xiang. Genetic Analysis of a Broad Hybrid Zone in Aesculus (Sapindaceae): Is There Evidence of Long-Distance Pollen Dispersal? International Journal of Plant Sciences 169(5):647-657.

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2007 Faculty Publications

Lord, T. and S. Baviskar. 2007. Moving Students from Information Recitation to Information Understanding: Exploiting Bloom's Taxonomy in Creating Science Questions. Journal of College Science Teaching. 36(5): 40-44.

Baxter, Colden V., Kurt D. Fausch, Masashi Murakami, and Phillip L. Chapman. 2007. Invading Rainbow Trout Usurp a Terrestrial Prey Subsidy from Native Charr and Reduced Their Growth and Abundance. Oecologia 153:461-470.

Bearden, S. E., Erik Linn, Blair S. Ashley, Robin C. Looft-Wilson. 2007. Age-related changes in conducted vasodilation: effects of exercise training and role in functional hyperemia. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology. 293:R1717-R1721.

Shawn E. Bearden. 2007. Advancing Age Produces Sex Differences In Vasomotor Kinetics During And After Skeletal Muscle Contraction. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology 293:R1274-R1279.

Stewart, Kelly M., R. Terry Bowyer, Roger W. Ruess, Brian L. Dick, and John G. Kie. 2007. Herbivore Optimization by North American Elk: Consequences for Theory and Management. Wildlife Monographs 167: 1-24.

Schmidt, J. I., J. M. Ver Hoef, and R. T. Bowyer. 2007. Antler size of Alaskan moose Alces alces gigas: effects of population density, hunter harvest and use of guides. Wildlife Biology 13:1 53-65.

Monteith, K. L., C. L. Sexton, J. A. Jenks, and R. T. Bowyer. 2007. Evaluation of Techniques for Categorizing Group Membership of White-Tailed Deer. Journal of Wildlife Management, 71(5):1712-1716.

Bowyer, R. Terry, Vernon C. Bleich, Xavier Manteca, Jericho C. Whiting & Kelley M. Stewart. 2007. Sociality, Mate Choice, and Timing of Mating in American Bison (Bison bison): Effects of Large Males. Ethology 113:1048-1060.

Cretekos C. J., J. M. Deng, E. D. Green, NISC Comparative Sequencing Program, J.J. Rasweiler IV, and R.R. Behringer. 2007. Isolation, genomic structure and developmental expression of Fgf8 in the short-tailed fruit bat, Carollia perspicillata. International Journal of Developmental Biology 51: 333-338.

Komar C.M., F. Zacharachis-Jutz, C.J. Cretekos, R.R. Behringer, and J.J. Rasweiler IV. 2007. Highly Polarized Ovaries of the Long-Tongued Bat, Glossophaga soricina - A Novel Model for Studying Ovarian Development. The Anatomical Record 290(11):1439-48.

Coates, P. S., J. O. Spencer, Jr., and D. J. Delehanty. 2007. Efficacy of CPTH-treated egg baits for removing ravens. Human-Wildlife Conflicts 1(2):224-234.

DeVeaux, L.C., J. R. Smith, S. Hobdey, E. C. Spindler, D.P. Wells, C. Frandsen, T. Webb, W. Beezhold. 2007. Effect of Electron Beam Dose Rate on Microbial Survival. Proceedings of the Eighth International Topical Meeting on Nuclear Applications and Utilization of Accelerators 388-393.

Irene Gregory-Eaves, Marc J. Demers, Lynda Kimpe, Eva M. Krummel, Robie W. MacDonald, Bruce P. Finney, and Jules M. Blais. 2007. Tracing Salmon-Derived Nutrients and Contaminants in Freshwater Foods Webs Across a Pronounced Spawner Density Gradient. Environmental Toxicology and Chemistry, 26(6):110-1108.

Daniel T. Selbie, Bert A. Lewis, John P. Smol, Bruce P. Finney. 2007. Long-Term Population Dynamics of the Endangered Snake River Sockeye Salmon: Evidence of Past Influences on Stock Decline and Impediments to Recovery. Transactions of the American Fisheries Society 136:800-821.

Seefledt, S., M. J. Germino, K. M. DiCristina. 2007. Prescribed fires have minor and transient effects on herbaceous vegetation cover and composition. Applied Vegetation Science 10: 249-256.

Gerrish R. S., J. E. Lee, J. Reed, J. Williams, L. D. Farrell, K. M. Spiegel, et al. 2007. PCR versus hybridization for detecting virulence genes of enterohemorrhagic Escherichia coli. Emerging Infectious Diseases 13:1253-1255. 2007.

Lee, J.E., J. Reed, M.S. Shields, K.M. Spiegel, L.D. Farrell, and P.P. Sheridan. 2007. Phylogenetic analysis of Shiga toxin 1 and Shiga toxin 2 genes associated with disease outbreaks. BMC Microbiology. 7:109.

Groome, J. R., Heidi M. Alexander, Esther Fujimoto, Megan Sherry, and David Petty. 2007. Central Charged Residues in DIIIS4 Regulate Deactivation Gating in Skeletal Muscle Sodium Channels. Cellular and Molecular Neurobiology 27:87-106.

Groome, J. R., M. Dice, E. Fujimoto and P. C. Ruben. 2007. Charge immobilization of skeletal muscle sodium channels: role of residues in the inactivation linker. Biophysical Journal 93: 1519-1533.

Cook, L.L., R.S. Inouye, T.P. McGonigle, and G.J. White. 2007. The distribution of stable cesium in soils and plants of the eastern Snake River Plain in southern Idaho. Journal of Arid Environments 69:40-64.

Bechtold, H. A. and R. S. Inouye. 2007. Distribution of carbon and nitrogen in sagebrush steppe after six years of nitrogen addition and shrub removal. Journal of Arid Environments 71 (1):122-132.

Ray, Andrew M. and Richard S. Inouye. 2007. Development of vegetation in a constructed wetland receiving irrigation return flows. Agriculture, Ecosystems and Environment 121:401-406.

Wenninger, E.J. and R.S. Inouye. 2007. Insect community response to plant diversity and productivity in a sagebrush-steppe ecosystem. Journal of Arid Environments 72:24-33.

Kelchner, S. A. and M. A. Thomas. 2007. Model use in phylogenetics: nine key questions. Trends in Ecology and Evolution 22:87-94.

Keeley, E.R., Parkinson, E.A., and Taylor, E.B. 2007. The origins of ecotypic variation of rainbow trout (Oncorhynchus mykiss): an experimental assessment of environmental versus genetically based differences in morphology. Journal of Evolutionary Biology 20: 725-736.

Seiler, S. M. and E. R. Keeley. 2007. Morphological and Swimming Stamina Differences between Yellowstone Cutthroat Trout (Oncorhynchus clarkii bouvieri), Rainbow Trout (Oncorhynchus mykiss), and their Hybrids. Canadian Journal of Fisheries and Aquatic Sciences 64: 127-135.

Dalerum, Fredrick, Janet Loxterman, Brad Shults, Kyran Kunkel, and Joseph A. Cook. 2007. Sex-Specific Dispersal Patterns of Wolverines: Insights From Microsatellite Markers. Journal of Mammalogy, 88(3):793-800.

Ledbetter, R. N., S. A. Connon, A. L. Neal, A. Dohnalkova, and T. S. Magnuson. 2007. Biogenic mineral production by a novel arsenic-metabolizing thermophilic organism from the Alvord Basin, OR. Applied and Environmental Microbiology 73: 5928-5936.

Cummings, D. E., S. Fendorf, N. Singh, R. K. Sani, B. M. Peyton, and T. S. Magnuson. 2007. Reduction of Cr (VI) under acidic conditions by the facultative Fe (III)-reducing bacterium (Acidiphilium cryptum). Environmental Science & Technology. 41:146-152.

Marcarelli A. M. and W. A. Wurtsbaugh. 2007. Effects of upstream lakes and nutrient limitation on periphyton biomass and nitrogen fixation in oligotrophic, subalpine streams. Freshwater Biology 52: 2211-2225.

Myers, A.K., A. M. Marcarelli, C.D. Arp, M.A. Baker, and W.A Wurtsbaugh. 2007. Disruptions of stream sediment size and stability by lakes in mountain watersheds: potential effects on periphyton biomass. Journal of the North American Benthological Society 26 (3): 390-400.

Matocq, Marjorie D., Quinn R. Shurtliff, Chris R. Feldman. 2007. Phylogenetics of the woodrat genus Neotoma (Rodentia: Muridae): Implications for the evolution of phenotypic variation in male external genitalia. Science Direct Molecular Phylogenetics and Evolution 42:637-652.

Meldrum, Jeff. 2007. Letter to the Editor: Hyperbipeds -- or -- From Biped to Strider. American Journal of Physical Anthropology 134:292-294.

Meldrum, D. J. 2007. Ichnotaxonomy of giant hominoid tracks in North America. In: Lucas, Spielmann and Lockley, eds., Cenozoic Vertebrate Tracks and Traces. New Mexico Museum of Natural History and Science Bulletin 42:225-231.

Meldrum, D. J. 2007. Renewed perspectives on the Laetoli trackways: the earliest hominid footprints. In: Lucas, Spielmann and Lockley, eds., Cenozoic Vertebrate Tracks and Traces. New Mexico Museum of Natural History and Science Bulletin 42:233-239.

Ogden, T. Heath and Michael S. Rosenberg. March 2007. How should gaps be treated in parsimony? A comparison of approaches using simulation, Molecular Phylogenetics and Evolution 42 (3):817-826.

Ogden, T. H. and M. S. Rosenberg. 2007. Alignment and Topological Accuracy of the Direct Optimization approach via POY and Traditional Phylogenetics via ClustalW + PAUP. Systematic Biology. 56(2):182-193.

Perkel, J. M. 2007. Stem Cells: Beyond Somatic Cell Nuclear Transfer. Science, 316:463.

Perkel, J.M. 2007. Cell signaling: In vivo veritas. Science, 316:1763.

Perkel, J.M. 2007. Selenium sensing sans calibration. Analytical Chemistry, 79:4747.

Battiprolu P. K., K. J. Harmon, K. J. Rodnick. 2007. Sex differences in energy metabolism and performance of teleost cardiac tissue. American Journal of Physiology (Regulatory, Integrative and Comparative Physiology). 292:R827-R836.

Cotter Paul A. and Kenneth J. Rodnick. 2007. Fishing for an ECG: a student-directed electrocardiographic laboratory using rainbow trout. Advances in Physiology Education 31:211-217.

Shurley, Jack F. and Gene M. Scalarone. 2007. Isoelectric focusing and ELISA evaluation of a Blastomyces dermatitidishuman isolate. Springer: DOI 10.1007/s11046-007-0933-8.

Shurley, Jack F. and Gene M. Scalarone. 2007. Comparison of Blastomyces dermatitidis Yeast Phase Lysate Antigens for Their Use as Diagnostic Reagents in the Competitive Inhibition ELISA for the Detection of Blastomycosis. Journal of Medical and Biological Sciences 1 (2):1-4.

Seeley, Rod R., Trent D. Stephens, Philip Tate. February 23, 2007. Anatomy and Physiology. McGraw-Hill Science/Engineering/Math; 8 edition.

Trent D. Stephens. 2007. McGraw-Hill Yearbook of Science & Technology. Thalidomide.

St-Hilaire S., Mark A. McGuire, Jeffery K. Tomberlin, Katie Cranfill, Erin E. Mosley, Larry Newton, Wendy Sealey, Stephen Irving and Craig Sheppard. 2007. Fish offal recycling by the black soldier fly produces a foodstuff high in omega-3 fatty acids. Journal of World Aquaculture 38(2), 309-313.

St-Hilaire S., Sheppard, C., Tomberlin, J.K., Irving, S., Newton, L., McGuire M.A., Mosley, E., Hardy, R., and Sealy, W. 2007. Fly prepupae as a feedstuff for Rainbow Trout Oncorhynchus mykiss. Journal of World Aquaculture 38 (1): 59-67.

Williams, Charles F. 2007. Effects OF Floral Display Size and Biparental Inbreeding on Outcrossing Rates in Delphinium barbeyi (Ranunculaceae). American Journal of Botany 94(10): 1696-1705.

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2006 Faculty Publications

Dahm, C. N., H. M. Valett, C.V. Baxter, and W.W. Woessner. 2006. Hyporheic zones. pp. 119-142 In F. R. Hauer and G. A. Lamberti, editors. Methods in stream ecology. Academic Press, San Diego. 2nd Edition.

Grimm, N.B., C.V. Baxter, C. L. Crenshaw. 2006. Surface-subsurface interactions in streams. pp. 1761-782 In F. R. Hauer and G. A. Lamberti, editors. Methods in stream ecology. Academic Press, San Diego. 2nd Edition.

Torgersen, C.E., C.V. Baxter, H.W. Li, and B.A. McIntosh. 2006. Landscape influences on longitudinal patterns of stream fishes: spatially continuous analysis of fish-habitat relationships. In R. Hughes, L. Wang, and P. Seelbach, editors. Influences of landscapes on stream habitats and biological communities. American Fisheries Society, Bethesda, Maryland, USA.

Bearden, S.E. 2006. Effect of aging on the structure and function of skeletal muscle microvascular networks. Microcirculation, 13(4): 305-314.

Payne, G.W., S. E. Bearden. 2006. The microcirculation of skeletal muscle in aging. Microcirculation 13(4) 275-277.

Whittall, Justen B., Matthew L. Carlson, Paul M. Beardsley, Robert J. Meinke, Aaron Liston. 2006. The Mimulus moschatus Alliance (Phrymaceae): Molecular and Morphological Phylogenetics and their Conservation Implications. Systematic Botany 31(2):380-397.

Nie, Ze-Long, Hang Sun, Paul M. Beardsley, Richard G. Olmstead, Jun Wen. 2006. Evolution of Biogeographic Disjunction Between Eastern Asia and Eastern North America in Phryma (Phrymaceae). American Journal of Botany. 93(9): 1343-1356.

Bleich V. C., B. M. Pierce, J. L. Jones, R. T. Bowyer. 2006. Variance in Survival of Young Mule Deer in the Sierra Nevada, California. California Fish and Game 92 (1):24-38.

Nicholson, M. C., R. T. Bowyer, J. G. Kie. 2006. Forage Selection by Mule Deer: Does Niche Breadth Increase with Population Density? Journal of Zoology. 269:39-49.

Bowyer, R. Terry, and John G. Kie. 2006. Effects of scale on interpreting life-history characteristics of ungulates and carnivores. Diversity and Distributions 12: 244-257.

Hundertmark Kris J., R. Terry Bowyer, Gerald F. Shields, Charles C. Schwartz and Michael H. Smith. 2006. Colonization History and Taxonomy of Moose Alces alcesin Southeaster Alaska Inferred from mtDNA Variation. Wildlife Biology. 12:331-338.

Farmer, C. F., D. K. Person, and R. T. Bowyer. 2006. Risk factors and survivorship of black-tailed deer in a managed forest landscape. The Journal of Wildlife Management 70:1403-1415. (International)

Jenks, Jonathan A., Christopher N. Jacques, Jaret D. Sievers, Robert W. Klaver, R. Terry Bowyer, and Daniel E. Roddy. 2006. Evaluating Genetic Viability of Pronghorn in Wind Cave National Park. The Prairie Naturalist 38(3): September 2006.

Bowers, N. and M. Brandon. 2006. Response to Nuhfer letter. Cell Biology Education 5: 315.

Elphick, C. S., J. M. Reed, D. J. Delehanty. 2006. Applications of Reproductive Biology to Bird Conservation and Population Management. In B. G. M. Jamieson (ed.). Reproductive Biology and Phylogeny of Birds. Science Publishers, Enfield, New Hampshire, USA.

Coates, P. S., D. J. Delehanty. 2006. Effect of capture date on nest-attempt rate of translocated sharp-tailed grouse. Wildlife Biology 12: 277-283.

DeVeaux, L. C., D. P. Wells, A. W. Hunt, T. Webb, W. Beezhold, 2006. Accelerator-Based Radiation Sources for Next-Generation Biological Research. Nuclear Instruments and Methods in Physics Research A 562:981-984.

DeVeaux, L. C., L. S. Durtschi, J. G. Case, D. P, Wells. 2006. Bystander Effects in Unicellular Organisms. Mutation Research 597:78-86.

Broderson C. R., M. J. Germino, W. K. Smith. 2006. Photosynthesis during an episodic drought in Abies lasiocarpa and Picea engelmannii across an alpine treeline. Arctic, Antarctic, and Alpine Research. 38:34-41.

Maher. E., M. J. Germino. 2006. Microsite differentiation among conifer species during seedling establishment at alpine-treeline. Ecoscience 13:334-341.

Germino, M.J., N. J. Hasselquist, T. M. McGonigle, W. K. Smith, P. Sheridan. 2006. Colonization of conifer seedling roots by fungal mycelium in an alpine treeline ecotone: Relationships to microsite, developmental stage, and ecophysiology of seedlings. Canadian Journal of Forest Research 36: 901-909.

Broderson, C, M. J. Germino, W. K. Smith. 2006. Photosynthesis during an episodic drought in Abies lasiocarpa and Picea engelmannii across an alpine treeline. Arctic, Antarctic, and Alpine Research 38:34-41.

Hill, J.P., M. J. Germino, J. M. Wraith, B. Olson, M. Swan. 2006. Advantages in water relations contribute to greater photosynthesis in Centaurea maculosa compared to established grasses. International Journal of Plant Sciences 167:269-277.

DiCristina, K., Germino M. J. 2006. Correlation of neighborhood relationships, carbon assimilation, and water status of sagebrush seedlings establishing after fire. Western North American Naturalist 66:441-449.

Li, Y., Z. Feng, R. Swihart, J. Bryant, and N. Huntly. 2006. Modeling the impact of plant toxicity on plant-herbivore dynamics. Journal of Dynamics and Differential Equations 18:1021-1042.

Hanser, S. and N. Huntly. 2006. The biogeography of mammals of fragmented sagebrush-steppe landscapes. Journal of Mammalogy 87:1165-1174.

Gilliland, K. D., N. Huntly, and J. E. Anderson. 2006. Age and population structure of Joshua trees (Yucca brevifolia) in the northwestern Mojave Desert. Western North American Naturalist 66:202-208.

Warren, P., C. Tripler, D. Bolger, S. Faeth, N. Huntly, C. Lepczyk, J. Meyer, T. Parker, E Shochat, and J. Walker. 2006. Urban food webs: predators, prey, and the people who feed them. Bulletin of the Ecological Society of America, October 2006:387-395.

Ray, A. M. and R. S. Inouye. 2006. Effects of water-level fluctuations on the arbuscular mycorrhizal colonization of Typha latifolia L. Aquatic Botany 84:210-21.

Ray, A. M. and R. S. Inouye. 2007. Development of vegetation in a constructed wetland receiving irrigation return flows. Agriculture, Ecosystems and Environments, 121:401-406.

Inouye, R. S. 2006. Effects of Shrub Removal and Nitrogen Addition on Soil Moisture in Sagebrush Steppe. Journal of Arid Environments. 65:604-681.

Bamboo Phylogeny Group [includes S. A. Kelchner]. 2006. The bamboo phylogeny project. Bamboo 27(6):11-14

Tank, D. C., P. M. Beardsley, S. A. Kelchner, and R. G. Olmstead. 2006. Review of the systematics of Scrophulariaceae s.l. and its current disposition. L. A. S. Johnson Invited Review No. 7, Australian Systematic Botany 19:289-307

Kahre, N., D.M. Lovelace, C.M. Eggleston, M.W. Swenson, T.S. Magnuson. 2006. Redox-linked conformation change and electron transfer between monoheme c-type cytochromes and oxides. Geochimica et Cosmochimica Acta 70: 4332-4342.

Cummings, D.E., T. S. Magnuson. 2006. Microbial Fe (III) reduction: ecological and physiological considerations. In Manual of Environmental Microbiology, 3rd Edition. American Society for Microbiology Press.

McPhee, R. D. E., Jeff Meldrum. 2006. Postcranial Remains of the Extinct Monkeys of the Greater Antilles, with Evidence for Semiterrestriality in Paraloatta. American Museum Novitates 3516:65.

Meldrum D. J. 2006. Sasquatch: Legend Meets Science. New York: Forge / Tom Doherty Associates.

Edited by C. E. Cushing, K. W. Cummins, G. W. Minshall. 2006. River and Stream Ecosystems of the World. First paperback edition. University of California Press, Berkeley.

Farrar, R. S., P. K. Battiprolu, N. S. Pierson, K. J. Rodnick. 2006. Steroid-induced cardiac contractility requires exogenous glucose, glycolysis and the sarcoplasmic reticulum in rainbow trout. The Journal of Experimental Biology 209, 2114-2128. *Contributed equally to the publication.

Cotter, Paul A., Kenneth J. Rodnick. 2006. Differential effects of anesthetics on electrical properties of the rainbow trout (Oncorhynchus mykiss) heart. Comparative Biochemistry and Physiology A 145: 158-165.

Sestero, Christine M., Gene M. Scalarone. 2006. Detection of IgG and IgM in sera from canines with blastomycosis using eight Blastomyces dermatitidisyeast phase lysate antigens. Mycopathologia 162:33-37.

Sestero, C.M. and G. M. Scalarone. 2006. Detection of the surface antigens BAD1 and a-(1,3)-glucan in six different strains of Bastomyces dermatitidis using monoclonal antibodies. Journal of Medical and Biological Sciences 1(1).

Horton, Rene' N., William A. Apel, Vicki S. Thompson, Peter P. Sheridan. 2006. Low temperature reduction of hexavalent chromium by a microbial enrichment consortium and a novel strain of Arthrobacter aurescens, BMC Microbiology, 6:5.

Smith, Rosemary J. and Belzer, Sharolyn J. 2006. Research on the effectiveness of an inquiry-based Biology Teaching Methods Course. ASTE Conference Proceedings.

Gozlan, R E., E. J. Peeler., M. Longshaw, S. St-Hilaire, S. W. Feist. 2006. Effect of microbial pathogens on the diversity of aquatic populations notably in Europe. Microbes and Infection 8; 1358-1364.

Whipps, C. M., T. Burton, V. Watral, S. St-Hilaire, and M. L. Kent. 2006. Assessing the accuracy of a polymerase chain reaction test for Ichthyophonus hoferi in Yukon River Chinook salmon (Oncorhynchus tshawytscha). Diseases of Aquatic Organisms 68:141-147.

St-Hilaire, S., N. Beevers, K. Way, R. M. Le Deuff, P. Martin, and C. Joiner. 2006. Reactivation of latent infections of KHV in Common carp Cyprinus carpio. Diseases of Aquatic Organisms 67:15-23.

St-Hilaire, S., Ellis, T., Cooke, A., North, B.P., Turnbull, J.F., Knowles, T. and Kestin, S. 2006. Fin erosion on commercial rainbow trout farms in the UK. The Veterinary Record 447-451.

Carlisle, Jay D., Charles H. Trost, Sarah L. Stock, and Gregory S. Kaltenecker. 2006. Autumn Landbird Communities in the Boise Foothills and Owyhee Mountains of Southwestern Idaho. Western Birds 37:215-227.

Kelchner, Scot A. and Michael A. Thomas. 2006. Nine key questions about model use in phylogenetics. Trends in Ecology & Evolution, 22: 87-94.

Johnson, Deborah A., Jeffrey P. Hill, and Michael A. Thomas. 2006. The monosaccharide transporter gene family in land plants is ancient and shows differential subfamily expression and expansion across lineages. BMC Evolutionary Biology, 6: 64.

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2005 Faculty Publications

Laeser, S. R., C. V. Baxter and K. D. Fausch. 2005. Effects of Stream Channelization and Riparian Vegetation Loss on Web-weaving Spiders in Northern Japan. Ecological Research 20:646-651.

Wright, K. K, C. V. Baxter, J. Li. 2005. Restricted Hyporheic Exchange in an Alluvial River System: Implications for Stream Ecology Theory and Watershed Management. Journal of the North American Benthological Society 24:447-460.

Baxter, C.V., K.D. Fausch and W. C. Saunders. 2005. Tangled webs: Reciprocal flows of invertebrate prey link streams and riparian zones. Freshwater Biology 50:201-220.

Bearden, S.E., S.S. Segal. 2005. Neurovascular alignment in adult mouse skeletal muscles. Microcirculation, 12(2):161-167.

Segal, S.S. and Bearden, S.E. 2005. Organization and Control of Circulation to Skeletal Muscle, in ACSM's Advanced Exercise Physiology. Eds. C.M. Tipton, M.N. Sawka, C.A. Tate, R.L. Terjung. Lippincott Williams & Wilkins.

Beardsley P. M., W. R. Barker. 2005. Patterns of Evolution in Australian Mimulus and Related Genera (Phrymaceae~Scrophulariaceae): A Molecular Phylogeny using Chloroplast and Nuclear Sequence Data. Australian Systematic Botany 18:61-73.

Oehler, Michael W., Vernon C. Bleich, R. Terry Bowyer and Matthew C. Nicholson. 2005. Mountain Sheep and Mining: Implications for Conservation and Management. California Fish and Game 91(3):149-178.

Stewart, K. M., R. T. Bowyer, B. L. Dick, B. K. Johnson, and J. G. Kie. 2005. Density-dependent Effects on Physical Condition and Reproduction in North American Elk: An Experimental Test. Oecologia 143:85-93.

Knott, K. K., P. S. Barboza, and R. T. Bowyer. 2005. Growth in Arctic Ungulates: Postnatal Development and Organ Maturation in Rangifer tarandus and Ovibos moschatus. Journal of Mammalogy 86:121-130.

Bowyer, R. T., D.K. Person, and B.M. Pierce. 2005. Detecting Top-down Versus Bottom-up Regulation of Ungulates by Large Carnivores: Implications for Conservation of Biodiversity. Pages 342-361 in Large Carnivores and the Conservation of Biodiversity. J. C. Ray, K. H. Redford, R. S. Steneck and J. Berger, (eds). Island Press, Covelo, California, 526 pp.

Schmidt, Jennifer I., Jay M. Ver Hoef, Julie A. K. Maier, and R. Terry Bowyer. 2005. Catch Per Unit Effort for Moose: A New Approach Using Weibull Regression. Journal of Wildlife Management 69(3):1112-1124.

Maier, Julie A. K., Jay M. Ver Hoef, A. David McGuire, R. Terry Bowyer, Lisa Saperstein, and Hilmar A. Maier. 2005. Distribution and Density of Moose in Relation to Landscape Characteristics: Effects of Scale. 2005. Canadian Journal of Forest Research. 35:2233-2243.

Duffy, L. K., R. J. Hallock, G. Finstad, and R. T. Bowyer. 2005. Noninvasive environmental monitoring of mercury in Alaskan reindeer. American Journal of Environmental Sciences 1:249-253.

Kie, J. G., A. A. Ager, and R. T. Bowyer. 2005. Landscape-level movements of North American elk (Cervus elaphus): effects of habitat patch structure and topography. Landscape Ecology 20:289-300.

Bowers, N., M. Brandon, and C. D. Hill. 2005. The use of a knowledge survey as an indicator of student learning in an introductory biology course. Cell Biology Education 4: 311 - 322.

Webb, T., W. Beezhold, F. Harmon, R. Spaulding, L. DeVeaux, J. Petrisko, 2005. Photonuclear and Radiation Effects Testing with a Refurbished 20 MeV Medical Electron Linac. Particle Accelerator Conference 2005 Proceedings.

Smith, Stanley D., Elke Naumberg, Ulo Niinemets, Matthew J. Germino. 2005. Environmental Constraints from Leaf to Landscape. In W. K. Smith, T. C. Vogelmann, C. Critchley (eds) Photosynthetic Adaptation: From Chloroplast to Landscape. Springer. pp 262-297.

Maher, Eliza L., M. J. Germino and Niles J. Hasslequist. 2005. Interactive Effects of Tree and Herb Cover on Survivorship, Physiology and Microclimate of Conifer Seedlings at the Alpine Tree-line Acadian. Canadian Journal of Forest Research. 35(3): 567-574.

Hill J. P., M. J. Germino. 2005. Coordinated variation in ecophysiological properties among life stages and tissue types in an invasive forb of shrub steppe. Canadian Journal of Botany 83:1488-1495.

Maher, E, M. J. Germino, N. J. Hasselquist. 2005. Interactive effects of tree and herb cover on survivorship, physiology, and microclimate of conifer seedlings at the alpine-treeline ecotone. Canadian Journal of Forest Research 35: 567-574.

Hasslequist, N. J., M. J. Germino, T. C. McGonigle, W.K. Smith. 2005. Variability of Cenococcum Colonization and its Ecophysiological Significance for Young Conifers at Alpine Treeline. New Phytologist 165: 867-873.

Hayes, A. and N. Huntly. 2005. Effects of wind on the behavior and call transmission of pikas (Ochotona princeps). Journal of Mammalogy 86:974-981.

Keeley, E. R., E. A. Parkinson, and E. B. Taylor 2005. Ecotypic differentiation of native rainbow trout (Oncorhynchus mykiss) populations from British Columbia. Canadian Journal of Fisheries and Aquatic Sciences, 62: 1523-1539.

Kie, J.G., A.A. Ager, and R.T. Bowyer. 2005. Landscape-level Movements of North American Elk (Cervus elaphus): Effects of Habitat Patch Structure and Topography. Landscape Ecology 20:289-300.

Vernon C. Bleich, John G. Kie, Eric R. Loft, Thomas R. Stephenson, Michael W. Oehler, and Alvin L. Medina. 2005. Managing rangelands for wildlife. Techniques for Wildlife Investigations and Management:873-897.

Bartelt, Paul E. and Charles R. Peterson. 2005. Physically Modeling Operative Temperatures and Evaporation Rates in Amphibians. Journal of Thermal Biology 30:93-102.

Alkanani, T., C. C. Parrish, K. J. Rodnick and A. K. Gamperl. 2005. Lipid Class and Nonesterified Fatty Acid Profiles in Plasma of North Atlantic Cod (Gadus morhua). Canadian Journal of Fisheries and Aquatic Sciences 52: 2509-2518.

Shurley, J. F., A. M. Legendre and G. M. Scalarone. 2005. Blastomyces dermatitidis Antigen Detection in Urine Specimens From Dogs With Blastomycosis Using a Competition Binding Inhibition ELISA. Mycopathologia 160:137-142.

Steen, S. L. 2005. Examining "Universal" Hide Chewing Practices Among Alaskan Eskimos. In: Frink L, Weedman K (eds). Gender and Hide Production. Walnut Creek: Alta Mira Press, pp 123-131.

Gozlan, Rodolphe E., Sophie St-Hilaire, Stephen W. Feist, Paul Martin and Michael L. Kent. 2005. Biodiversity: Disease threat to European fish. Nature 435, 1046 doi: 10.1038/4351046a.

Gozlan, R.E., S. St-Hilaire, S. W. Feist, P. Martin, and M. L. Kent. 2005. An emergent infectious disease threatens European fish biodiversity. Nature 435(7045); p.1046.

Wilson, J., G. Tice, M. Brash, and S. St. Hilaire. 2005. Manifestations of Clostridium perfringens and Related Bacterial Enteritides in Broiler Chickens. World Poultry Science Journal 61(3);435-449.

Michael A. Thomas, Mitch Day, and Luobin Yang. Computational Options for Bioinformatics Research in Evolutionary Biology. In the Proceedings of the 2005 International Conference on Computer Science.

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2004 Faculty Publications

Wolff, J. Brock, Martin J. Lee and Curtis W. Anderson. 2004. Contribution of the submentalis Muscle to Feeding Mechanics in the Leopard Frog, Rana pipiens . Journal of Experimental Zoology 301A:666-673.

Baxter, C. V., K. D. Fausch, M. Murakami and P. L. Chapman. 2004. Non-native Stream Fish Invasion Restructures Stream and Riparian Forest Food Webs by Interrupting Reciprocal Prey Subsidies. Ecology 85: 2656-2663.

Bearden, S. E., S. S. Segal. 2004. Microvessels Promote Motor Nerve Survival and Regeneration through VEGF following Ectopic Reattachment. Microcirculation 11(8):633-644.

Bearden, S. E., G. W. Payne, A. Chisty, S. S. Segal. 2004. Arteriolar Network Architecture and Vasomotor Function with Aging in Mouse Gluteus Maximus Muscle. Journal of Physiology 561 (Pt 2):535-45.

Bearden, S.E., P.C. Henning, T.A. Bearden, R.J. Moffatt. 2004. The slow component of VO2 kinetics in very heavy and fatiguing square-wave exercise. European Journal of Applied Physiology 91:586-594.

Maron, John L., Montserrat Vila, Riccardo Bommarco, Sarah Elmendorf and Paul Beardsley. 2004. Rapid Evolution of an Invasive Plant. Ecological Monographs 74(2):261-280

Beardsley, Paul M., Steve E. Schoenig, Justen B. Whittall and Richard G. Olmstead. 2004. Patterns of Evolution in Western North American Mimulus (Phrymaceae). American Journal of Botany 91(3):474-489.

Beardsley, P. M. 2004. Middle School Student Learning in Evolution: Are Current Standards Achievable? American Biology Teacher 66 (9), 604-612.

Blundell, Gail M., Merav Ben-David, Pamela Groves, R. Terry Bowyer and Eli Geffen. 2004. Kinship and Sociality in Coastal River Otters: Are They Related? Behavioral Ecology 15(5):705-714.

Bowyer, R. Terry and John G. Kie. 2004. Effects of Foraging Activity on Sexual Segregation in Mule Deer. Journal of Mammalogy 83(3):498-504.

Pierce, Becky M., R. Terry Bowyer and Vernon C. Bleich. 2004. Habitat Selection by Mule Deer: Forage Benefits or Risk of Predation? Journal of Wildlife Management 68(3):533-541.

Johnson, Devin S., Ronald P. Barry and R. Terry Bowyer. 2004. Estimating Timing of Life-history Events with Coarse Data. Journal of Mammalogy 83(5):932-939.

Knott, Katrina K., Perry S. Barboza, R. Terry Bowyer and John E. Blake. 2004. Nutritional Development of Feeding Strategies in Arctic Ruminants: Digestive Morphometry of Reindeer, Rangifer tarandus, and Muskooxen, Ovibos moschatus. Zoology 107:315-333.

Bowyer, R. Terry. 2004. Sexual Segregation in Ruminants: Definitions, Hypotheses, and Implications for Conservation and Management. Journal of Mammology 85(6):1039-1052.

Delehanty, David J., Sid S. Eaton and Thomas C. Campbell. 2004. From the Field: Mountain Quail Fidelity to Guzzlers in the Mojave Desert. Wildlife Society Bulletin 2004, 32(2):588-593.

Delehanty, David J. and Nichole C. Turek. 2004. Using Wing Plumage to Determine Age of Mountain Quail. North American Bird Bander. 28 (3):116-120.

Johnson, D.M., M. J. Germino, W. K. Smith. 2004. Abiotic factors limiting photosynthesis in Abies lasiocarpa and Picea engelmannii seedlings below and above alpine timberline. Tree Physiology 24:377-387.

Smith S. D., E. Naumburg, U. Niinements, M. J. Germino. 2004. Environmental Limitations: Dry and cold environments. In: Photosynthetic Adaptation from the Chloroplast to the Landscape. Eds: Smith WK, Vogelmann, TC, Critchley, C. Academic Press.

Hou, Gui-chuan and Jeffrey P. Hill. 2004. Developmental Anatomy of the Fifth Shoot-borne Root in Young Sporophytes of Ceratopteris richardii. Planta 219:212-220.

Hou, Guichuan, Jeffrey P. Hill and Elison B. Blancaflor. 2004. Developmental Anatomy and Auxin Response of Lateral Root Information in Ceratopteris richardii. Journal of Experimental Botany 55 (397):685-693.

Imre, I., J. W. A. Grant and E. R. Keeley. 2004. The Effect of Food Abundance on Territory Size and Population Density of Juvenile Steelhead Trout (Oncorhynchus mykiss). Oecologia 138: 371- 378.

Trueman, J. W. H., B. E. Pfeil, S. A. Kelchner and D. K. Yeates. 2004. Did Stick Insects Really Regain Their Wings? Systematic Entomology 29:138-139.

Naylor, Leslie and John G. Kie. 2004. Monitoring Activity of Rocky Mountain Elk using Recording Accelerometers. Wildlife Society Bulletin 32:1108-1113.

Magnuson, T. S., A. L. Neal, and G. G. Geesey. 2004. Combining in situ reverse transcriptase polymerase chain reaction, optical microscopy, and X-ray photoelectron spectroscopy to investigate mineral surface-associated microbial activities. Microbial Ecology 48: 578-588.

Neal, A. L., L. K. Clough, T. D. Perkins, B. J. Little, and T. S. Magnuson. 2004. Characterization of surface-associated growth, mineral transformation, and gene expression by Geobacter pelophilus grown on solid-phase mineral surfaces. FEMS Microbiology Ecology 49: 163-169.

Matocq, Marjorie D. and Eileen A. Lacey. 2004. Philopatry, Kin Clusters, and Genetic Relatedness in a Population of Woodrats (Neotoma macrotis). Behavioral Ecology 15 (4):647-653.

Matocq, Marjorie, D. 2004. Reproductive Success and Effective Population Size in Woodrats (Neotoma Macrotis). Molecular Ecology 13:1635-1642.

Meldrum, D. Jeffrey. 2004. Midfoot Flexibility, Fossil Footprints, and Sasquatch Steps: New Perspectives on the Evolution of Bipedalism. Journal of Scientific Exploration 18 (1):65-79.

Meldrum, D. Jeffrey. 2004. Fossilized Hawaiian Footprints Compared with Laetoli Hominid Footprints. From Biped to Strider: The Emergence of Modern Human Walking, Running, and Resource Transport:63-83.

Meldrum D. J. and C. E. Hilton(eds). 2004. From Biped to Strider: The Emergence of Modern Human Walking, Running, and Resource Transport. New York: Kluwer Academic/Plenum.

Karr, James R., Jonathan J. Rhodes, G. Wayne Minshall, F. Richard Hauer, Robert L. Beschta, Christopher A. Frissell and David A. Perry. 2004. The Effects of Postfire Salvage Logging on Aquatic Ecosystems in the American West. BioScience, November Vol. 54 No. 11:1029-1033.

Bartelt, P. E., C. R. Peterson, and R.W. Klaver. 2004. Sexual Differences in the Post-breeding Movements and Habitats Selected by Western Toads (Bufo boreas) in Southeastern Idaho. Herpetologica, 60(4):455-467.

Rodnick, K. J., A. K. Gamperl, K. R. Lizars, M. T. Bennett, R. N. Rausch and E. R. Keeley. 2004. Thermal Tolerance and Metabolic Physiology Among Redband Trout Populations in South-eastern Oregon. Journal of Fish Biology 64:310-335.

Faust, Heather A., A. Kurt Gamperl and Kenneth J. Rodnick. 2004. All Rainbow Trout (Oncorhynchus mykiss) are not Created Equal: Intra-specific Variation in Cardiac Hypoxia Tolerance. The Journal of Experimental Biology 207:1005-1015.

Farrar, Richard S. and Kenneth J. Rodnick. 2004. Sex-dependent Effects of Gonadal Steroids and Cortisol on Cardiac Contractility in Rainbow Trout. The Journal of Experimental Biology 207:2083-2093.

Clow, K. A., K. J. Rodnick, T. J. MacCormack, W. R. Driedzic. 2004. The Regulation and Importance of Glucose Uptake in the Isolated Atlantic Cod Heart: Rate-limiting Steps and Effects of Hypoxia. Journal of Experimental Biology 207:1865-1874.

Clark J. J., R. J. Clark, J. T. McMinn, and K. J. Rodnick. 2004. Microvascular and Biochemical Compensation during Ventricular Hypertrophy in Male Rainbow Trout. Comparative Biochemistry and Physiology, Part B 139:695-703.

Gamperl A. K., H. A. Faust, B. Dougher, K. J. Rodnick. 2004. Hypoxia Tolerance and Preconditioning are not Additive in the Trout (Oncorhynchus mykiss) Heart. Journal of Experimental Biology 207:2497-2505.

Abuodeh, R. O., E. M. Chester and G. M. Scalarone. 2004. Comparative Serological Evaluation of 10 Blastomyces dermatitidis Yeast Phase Lysate Antigens from Different Sources. Mycoses 47 (3-4):143.

V. I. Miteva, P. P. Sheridan and J. E. Brenchley. 2004. Phylogenetic and Physiological Diversity of Microorganisms Isolated from a Deep Greenland Glacier Ice Core. Applied and Environmental Microbiology. Volume 70:202-213.

Merrick, Melissa J. and Rosemary J. Smith. 2004. Temperature Regulation in Burying Beetles (Nicrophorusspp.: Coleoptera: Silphidae): Effects of Body Size, Morphology and Environmental Temperature. The Journal of Experimental Biology 207:723-733.

St-Hilaire, S. and B. Mander. 2004. Ulcer disease in common carp fisheries in the UK. Fish Veterinary Journal 8; 90-95.

St-Hilaire, S., M. Gubbins, and A. Bayley. 2004. Investigation of a wild fish kill on the River Tyne. Fish Veterinary Journal 8; 96-100.

Jermakowicz III, Walter J., David A. Dorsy, Amy L. Brown, Karen Wojciechowski, Claudette L. Giscombe, Brent M. Graves, Cliff H. Summers and Gary R. Ten Eyck. 2004. Development of the Nasal Chemosensory Organs in Two Terrestrial Anurans: The Directly Developing Frog, Eleutherodactylus coqui (Anura: Leptodactylidae), and the Metamorphosing Toad, Bufo americanus (Anura: Bufonidae). Journal of Morphology 261:225-248.

Jensen-Seaman, Michael I., Terrence S. Furey, Bret A. Payseur, Yontao Lu, Krishna M. Roskin, Chin-Fu Chen, Michael A. Thomas, David Haussler and Howard J. Jacob. 2004. Comparative Recombination Rates in the Rat, Mouse and Human Genomes. Genome Research 14:528-538.

Thomas, Michael A. and Rebecca Klaper. 2004. Genomics for the Ecological Toolbox. Trends in Ecology and Evolution 19 (8):439-445.

Klaper, Rebecca and Michael A. Thomas. 2004. At the Crossroads of Genomics and Ecology: The Promise of a Canary on a Chip. BioScience 54 (5):403-412.

Tadashi Imanishi. . ., . . .Michael A. Thomas. . ., . . .Takashi Gojobori, and 148 co-authors. 2004. Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones. Public Library of Science 2:1-21.

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